mip_dmp.qt5.components.dataset_mapper_window module

Module that defines the class dedicated to the main window of the MIP Dataset Mapper UI application.

class mip_dmp.qt5.components.dataset_mapper_window.MIPDatasetMapperWindow(mainWindow)[source]

Bases: object

Class for the main window of the MIP Dataset Mapper UI application.

addMappingTableRow()[source]: Add a row to the mapping table.

adjustWidgetsAndLayouts()[source]: Add widgets to the layouts of the UI elements.

adjustWindow(mainWindow)[source]

Adjust the window size, Qt Style Sheet, and title.

Parameters

mainWindowQMainWindow: The main window of the application.

cdeCode

cdeType

centralWidgetGridLayout

centralWidgetSplitter

centralwidget

checkMapping()[source]

Check the content of the mapping table.

This function checks if:

The mapping table contains unique mapping to a specific CDE code.

The mapping contains only valid CDE codes.

The mapping transform is correctly formatted.

columnsCDEsMappingData

columnsCDEsMappingGroupBox

columnsCDEsMappingGroupBoxLayout

columnsCDEsMappingPandasModel

columnsCDEsMappingSplitter

connectButtons()[source]: Connect the buttons to their corresponding functions.

createComponents(mainWindow)[source]

Create the UI components.

Parameters

mainWindowQMainWindow: The main window of the application.

createInputDatasetComponents(mainWindow)[source]

Create the components of the input dataset group box.

Parameters

mainWindowQMainWindow: The main window of the application.

createMappingComponents(mainWindow)[source]

Create the components of the mapping group box.

Parameters

mainWindowQMainWindow: The main window of the application.

createMappingTableRowViewComponents()[source]: Create the components of the mapping table row editor group box.

createTargetCDEsComponents(mainWindow)[source]

Create the components of the target CDEs group box.

Parameters

mainWindowQMainWindow: The main window of the application.

createToolBar(mainWindow)[source]

Create the tool bar.

Parameters

mainWindowQMainWindow: The main window of the application.

datasetColumn

deleteMappingTableRow()[source]: Delete the selected row from the mapping table.

disableMappingComponents()[source]: Disable the mapping components.

disableMappingInitItems()[source]: Disable the mapping initialization items.

disableMappingMapButtons()[source]: Disable the check / save / load mapping and map buttons.

embeddingCanvas

embeddingFigure

embeddingViz()[source]: Open the embedding visualization window.

embeddingVizButton

embeddingWidget

embeddingWidgetLayout

enableMappingButtons()[source]: Enable the check / save / load mapping and map buttons.

enableMappingComponents()[source]: Enable the mapping components.

enableMappingInitItems()[source]: Enable the mapping initialization items.

initMapping()[source]: Initialize an empty column/CDEs mapping table.

initMatchingMethod

initializeMappingEditForm(index)[source]

Initialize the mapping row editor form with the data of the selected row.

Parameters

indexQModelIndex: The index of the selected row in the mapping table.

inputDataset

inputDatasetColumnEmbeddings

inputDatasetColumns

inputDatasetFormLayout

inputDatasetFormLayoutWidget

inputDatasetGroupBox

inputDatasetGroupBoxLayout

inputDatasetLoadButton

inputDatasetPandasModel

inputDatasetPath

inputDatasetPathLabel

inputDatasetTableView

leftCentralWidgetSplitter

loadCDEsFile()[source]: Load the CDEs file.

loadInputDataset()[source]: Load the input dataset.

loadMapping()[source]: Load the mapping file.

map()[source]: Map the input dataset to the target CDEs.

mapButton

mappingCheckButton

mappingFilePath

mappingFilePathLabel

mappingFormLayout

mappingFormLayoutWidget

mappingInitButton

mappingInitLabel

mappingLoadButton

mappingMatch()[source]: Initialize the column/CDEs mapping based on fuzzy word matching and character embedding methods.

mappingRowIndex

mappingSaveButton

mappingTableRowUpdateGroupBox

mappingTableRowUpdateGroupBoxLayout

mappingTableView

mappingTableViewAddDeleteRowLayout

mappingTableViewAddDeleteRowWidget

mappingTableViewAddRowButton

mappingTableViewDeleteRowButton

mappingTableViewLayout

mappingTableViewWidget

matchedCdeCodes

matchingViz()[source]: Open the matching visualization window.

matchingVizButton

matchingWidget

outputDirectoryLabel

outputDirectoryPath

outputDirectorySelectButton

outputFilename

outputFilenameLabel

outputFilenameSelectButton

outputFormLayout

outputFormLayoutWidget

outputGroupBox

outputGroupBoxLayout

rightCentralWidgetSplitter

saveMapping()[source]: Save the mapping file.

selectOutputFilename()[source]: Select the output filename.

statusbar

targetCDEs

targetCDEsEmbeddings

targetCDEsFormLayout

targetCDEsFormLayoutWidget

targetCDEsGroupBox

targetCDEsGroupBoxLayout

targetCDEsLoadButton

targetCDEsPandasModel

targetCDEsPath

targetCDEsPathLabel

targetCDEsTableView

toolBar

transform

transformType

updateMappingEditForm(index)[source]

Update the mapping table row form for a given index.

Parameters

indexQModelIndex: The index of the selected row to be updated in the mapping table.

updateMappingRowButton

updateMappingTableRow()[source]: Update the selected row of the mapping table with the data of the form.

updateStatusbar(message)[source]: Update the statusbar with the given message.