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Getting started

  • Installation Instructions for Users

User Documentation

  • Commandline Usage
  • Grahical User Interface

Developer Documentation

  • Instructions for Developers

API Documentation

  • mip_dmp.cli
  • mip_dmp.plot
  • mip_dmp.process
  • mip_dmp.qt5
  • mip_dmp.ui
  • mip_dmp.utils

About mip_dmp

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  • Contributors
  • Contributing
mip_dmp: Assistant for mapping datasets to the common schema of a federation of the Medical Informatics Platform
  • mip_dmp package

mip_dmp package

Subpackages

  • mip_dmp.cli package
    • Submodules
      • mip_dmp.cli.mip_dataset_mapper_cli module
        • main()
    • Module contents
  • mip_dmp.plot package
    • Submodules
      • mip_dmp.plot.embedding module
        • scatterplot_embeddings()
      • mip_dmp.plot.matching module
        • heatmap_matching()
    • Module contents
  • mip_dmp.process package
    • Submodules
      • mip_dmp.process.embedding module
        • chars2vec_embedding()
        • embedding_similarity()
        • find_n_closest_embeddings()
        • generate_embeddings()
        • glove_embedding()
        • reduce_embeddings_dimension()
      • mip_dmp.process.mapping module
        • apply_transform_map()
        • apply_transform_scale()
        • map_dataset()
        • transform_dataset_column()
      • mip_dmp.process.matching module
        • generate_initial_transform()
        • make_distance_vector()
        • make_initial_transform()
        • match_column_to_cdes()
        • match_columns_to_cdes()
      • mip_dmp.process.utils module
        • is_number()
    • Module contents
  • mip_dmp.qt5 package
    • Subpackages
      • mip_dmp.qt5.assets package
        • Module contents
      • mip_dmp.qt5.components package
        • Submodules
        • Module contents
      • mip_dmp.qt5.model package
        • Submodules
        • Module contents
    • Module contents
  • mip_dmp.ui package
    • Submodules
      • mip_dmp.ui.mip_dataset_mapper_ui module
        • MIPDatasetMapperUI
        • main()
    • Module contents
  • mip_dmp.utils package
    • Submodules
      • mip_dmp.utils.io module
        • generate_output_path()
        • load_c2v_model()
        • load_csv()
        • load_excel()
        • load_glove_model()
        • load_json()
        • load_mapping_json()
      • mip_dmp.utils.logger module
        • setup_logging()
      • mip_dmp.utils.parser module
        • create_parser()
    • Module contents

Module contents

MIP Dataset Mapper main module that stores the package version.


© Copyright 2023, The MIP team, University Hospital of Lausanne (CHUV), Switzerland & Contributors. Last updated on Aug 14, 2023.

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