Software Catalog

This catalog attempts to collect all open-source software produced for the Medical Informatics Platform.

It should contain all publicly accessible software for the phase SGA1 month 6.

Open source software

Infrastructure

Trello Trello

Deployment Organisation License Planning Continuous integration
mip-microservices-infrastructure CHUV License Stories in Ready
Stories in In Progress
CircleCI
dev-setup CHUV License Trello CircleCI
Catalog
ansible-airflow
CHUV License CircleCI wercker status
docker-flyway CHUV License
xnat-docker CHUV License
labkey-docker CHUV License
MIPMap-docker EPFL License
WebMIPMap-docker EPFL License
PostgresRAW-docker EPFL License
PostgresRAW-UI-docker EPFL License
RAW-deploy EPFL License
ExaremeLocal-docker UOA License

Web Portal, exploration and analytics, scientific applications

Trello

Portal Organisation License Planning Continuous integration
portal-specs CHUV
portal-backend CHUV License CircleCI Codacy Badge
portal-frontend CHUV License Trello
bootstrap-mip-app CHUV License
sunburst CHUV License
Model of disease Organisation License Planning Continuous integration
gene-expression CHUV License
2d-biological-rules CHUV License

Algorithm factory

Trello Trello

Algorithm Factory Organisation License Planning Continuous integration
woken CHUV License
base-docker-images CHUV License
python-base-docker-images CHUV License
functions-repository CHUV License
sample-datasets-db CHUV License

Data Factory

Trello Trello Trello

Data Factory Organisation License Planning Continuous integration
data-tracking CHUV License Codacy Badge CircleCI
i2b2-import CHUV License Codacy Badge CircleCI
data-catalog-setup CHUV License Codacy Badge CircleCI
hierarchizer CHUV License
i2b2-setup CHUV License Codacy Badge CircleCI
mri-preprocessing-pipeline CHUV License
airflow-imaging-plugins CHUV License Codacy Badge Code Health
data-factory-airflow-dags CHUV License Codacy Badge Code Health

Algorithm Library

Algorithm Library Organisation License Planning Continuous integration
Label Propagation Framework UCL
Exareme mip-algorithms UOA License
hbpjdbcconnect CHUV License
hbplregress CHUV License
hbpsummarystats CHUV License
CCC TAU License
jsi-functions JSI [License] [License]
bhtsne LUMC License
Rtsne LUMC License

Hospital Database Bundle

Hospital database Bundle Organisation License Planning Continuous integration
Catalog
MIPMap
AUEB License
Catalog
WebMIPMap
AUEB License
Catalog
MIPMapRew
AUEB
PostgresRAW EPFL License
PostgresRAW-UI EPFL License
raw EPFL License
JDBCValidator EPFL License
Exareme UOA License Travis-CI

Docker images

The Organisation and License column below refer to the docker image packaging. For the software contained in the images, please refer to the tables above.

Docker image Organisation License Build status Image version Image layers
DockerHub
DockerHub CHUV License CircleCI ImageVersion ImageLayers
DockerHub CHUV License ImageVersion ImageLayers
DockerHub CHUV License ImageVersion ImageLayers
DockerHub CHUV License CircleCI ImageVersion ImageLayers
DockerHub CHUV License ImageVersion ImageLayers
DockerHub EPFL License ImageVersion ImageLayers
DockerHub EPFL License ImageVersion ImageLayers
DockerHub EPFL License ImageVersion ImageLayers
DockerHub EPFL License ImageVersion ImageLayers
DockerHub UOA License ImageVersion ImageLayers